Software
KmerStream
KmerStream is a program that implements a streaming algorithm for determining the number of distinct k-mers in High Throughput Sequencing datasets. For DNA sequencing experiments, KmerStream can be used to determine the size of the genome as well as the k-mer error rate for the experiment.
- Publication: Melsted P, Halldórsson BV.: KmerStream: streaming algorithms for k-mer abundance estimation. Bioinformatics (2014) 30 (24): 3541-3547
- Source code https://github.com/pmelsted/KmerStream
BFCounter
BFCounter is a program for counting k-mers in DNA sequence data.